PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568546.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 913aa    MW: 104082 Da    PI: 3.9995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08467486525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     lC+ffa+ G+C +G++C+F H
  XP_012568546.1 467 LCDFFAK-GWCIRGSSCSFLH 486
                     8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0096462488IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333462489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.1E-6462486IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6467486IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MSISDSPVAD DPSLQDDEDD DEEEEEEEEE EIEEEVEEEE EHEEEQEEEE EIEEQQQQQE  60
EEEEEEVEEV EEEEEEEEEE EEEEEEEEVE EEEEEVVEEE EEEVVEEEEE EEEEEEEKEE  120
EVEEVEEEEE VEEVEEEEEE EVDEEKGEEV EEEEVETIEV EEEEEEEEVE EEEVETVEVE  180
EEEEEEEEEE QEEETIGMEK EEKEEIAMEE EEEKEEEAIK VKEEEEQEEA EAIKIKKEEE  240
QEAVVEEKEV VPDSLLDADI LNKDLSQHME FKVKEENMGP VSSVAENPVV MKSSHYMEEN  300
DAVFKASVPS HEAITLKKEE FHLKQEISSP PKSSANLISA EDGKNQGLNV DLDNARSPVQ  360
RKTFGGGSEP DCNSKASLSD VKDIDSRATK SSSDMGKDVV TGVIQRDNFV EDADGGPNSK  420
KKIMQSEIES IVDVKQTTSR FGHDSWRTRD LSPSADIKDG NKRPAILCDF FAKGWCIRGS  480
SCSFLHIKDS VNNSDQEAEG DSFTALQKRE LKLEKGVKER LDGLRTNEEE ASPSWHPSHE  540
KEKFLMRDSL FPESRSAFNA SNNYFTSNHS SYSSRAEGMT ANRNQHMYRG FSNALCSQKL  600
LNSEKEYHAL KSTFSSERED LPLVGSSRVP PHSNGYKLKT CSNNWEPSVP FRPSFFITSM  660
NVSSPGDLYD PLRDSIEIPN IGDGSLKASL LIRGSSIQAS SQARTCDDSA AVGKHMSDLN  720
DDKSSVSSHN KFYENEPNRS SVPRGKDCLS TKTEITSGTC SNYQNGYVDV GQHTFSVEDT  780
METEKKRTEH DARHHGEGSG HKKRRVSKDN KIYEMDVDFQ TDGSVQKETK AVKIFRAALV  840
DLVKELLKPF WHEGRLSKDA HIVIVKKSVD KVVSTLEAHQ IPTTEDTAKQ YVSSCRSKIA  900
KLVNGYVSKY GKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1784804KKRTEHDARHHGEGSGHKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568546.10.0PREDICTED: uncharacterized protein DDB_G0283697 isoform X3
TrEMBLG7ISE10.0G7ISE1_MEDTR; Uncharacterized protein
STRINGGLYMA15G08331.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-32C3H family protein